PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g050470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 384aa    MW: 43810.1 Da    PI: 8.5243
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g050470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05118141123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ C+++F ++ nL +H +  H
  Csa13g050470.1 118 YFCGVCDRRFYTNANLINHFKQiH 141
                     78*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.1E-5100152IPR029060PIN domain-like
SuperFamilySSF576673.22E-5111153No hitNo description
PROSITE profilePS5015711.074118146IPR007087Zinc finger, C2H2
PROSITE patternPS000280120141IPR007087Zinc finger, C2H2
CDDcd061671.80E-13184270No hitNo description
PfamPF019365.0E-7189270IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10104.1E-5203258IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MFPRIVRVQR VRSPKTQITS LNSIKGFSFS SLINPKPQIR TGVFWDLDNK PPASFPPYDA  60
AVKLRIAASS FGFVKLMVAY ANRHAFSYVP LVVREERRDR KLLNELENTG KVKPPEPYFC  120
GVCDRRFYTN ANLINHFKQI HETEHQKRMR QIESSKGHQR VRLLAKYSMK IEKYKRAARK  180
VLTPKEGYGL ADELKRAGFW VKMVSDKPEA ADVALKEHMV DVMDKREVEC VVLVSDDSGY  240
AGVLREAKER CLRTVVIGDL NEGVLKRVAD VSYSWKEVVM GKAKKEVEKV VGKWKDRDVL  300
KKLEWSYDPV LEKEKGGSCG VWDYEFDCDD DEIENVTEME IGDGGDWWKI DNEDGVGSSR  360
PCRSHHTIVG IDCAEEDNNN LGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195101ERRDRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189360.0AK118936.1 Arabidopsis thaliana At4g12240 mRNA for unknown protein, complete cds, clone: RAFL21-27-H22.
GenBankAL0803180.0AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455664.10.0PREDICTED: uncharacterized protein LOC104737231
TrEMBLR0HCK60.0R0HCK6_9BRAS; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__3166__AT4G12240.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein